Chikungunya Virus Genome and Annotation

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S.No. Accession No. Length Year Isolate/Strain Country Mol Type Host
01 FJ445510 11800 bp 2008 SGEHICHS277108 Singapore Genomic RNA Homo sapiens
02 FJ445427 11717 bp 2007 LKMTCH2707 Sri Lanka Genomic RNA Homo sapiens
03 FN295483 11612 bp 2006 MY/06/37348 Malaysia:Perak Genomic RNA Homo sapiens
04 JF274082 11829 bp 2006 IND-06-Guj India: Gujarat Genomic RNA Homo sapiens
05 MG208125 12022 bp 2013 H20235/St. Martin/2013 Saint Martin Genomic RNA Homo sapiens
06 MF499120 11733 bp 2016 hk02 Hong Kong Genomic RNA Homo sapiens
07 MF774619 11790 bp 2016 Pakistan-10/2016 Pakistan Genomic RNA Homo sapiens
08 MF001519 12008 bp 2015 JFRO_15 USA Genomic RNA Homo sapiens
09 KX009171 11616 bp 2013 Chik397 Thailand Genomic RNA Homo sapiens
10 KY415985 12037 bp 2014 Haiti-10/2014 Haiti Genomic RNA Homo sapiens
11 KY057363 11834 bp 2016 119067 India Genomic RNA Homo sapiens
12 KX496989 12037 bp 2016 Homo sapiens/COL/UF-1/2016 Colombia Viral cRNA Homo sapiens
13 KT308163 11562 bp 2012 CPCC095700Y01 Philippines Genomic RNA Homo sapiens
14 KX228391 11601 bp 2016 BR33 Brazil: Pernambuco Genomic RNA Homo sapiens
15 KT192707 11889 bp 2014 11540 Nicaragua Genomic RNA Homo sapiens
16 LN898112 12230 bp 2014 Caribbean strain Martinique Genomic RNA Homo sapiens
17 KT327167 12176 bp 2014 TA0006 Mexico Genomic RNA Homo sapiens
18 KR046234 12003 bp 2014 VE55_4 Trinidad and Tobago Genomic RNA Homo sapiens
19 KR264951 12014 bp 2014 PR-S6 Puerto Rico Genomic RNA Homo sapiens
20 KP851710 11991 bp 2014 InDRE 4CHIK Mexico: Jalisco Genomic RNA Homo sapiens; Female
21 KM673291 11979 bp 2013 DH130003 Indonesia: Bali Genomic RNA Homo sapiens
22 KP003812 11561 bp 2007 GABOPY1 Gabon Genomic RNA Homo sapiens
23 KP003811 11562 bp 2007 StBI Italy Genomic RNA Homo sapiens
24 KP003809 11791 bp 2006 OPY4 Mayotte Genomic RNA Homo sapiens
25 KP003808 11562 bp 2006 MADOPY1 Madagascar Genomic RNA Homo sapiens
26 KJ451624 12011 bp 2014 99659 British Virgin Islands Genomic RNA Homo sapiens
27 KJ451623 12014 bp 2013 3462 Micronesia: Yap State Genomic RNA Homo sapiens
28 KF590567 12530 bp 2010 10Mdy105 Myanmar Genomic RNA Homo sapiens
29 KC862329 11836 bp 2010 NL10/152 Indonesia Genomic RNA Homo sapiens
30 JN558836 11733 bp 2009 SVUKDP-09 India: Andhra Pradesh, Kadapa Genomic RNA Homo sapiens
31 HE806461 11621 bp 2011 NC/2011-568 New Caledoniatd Genomic RNA Homo sapiens
32 FR717337 11559 bp 2005 IMTSSA6424C France:La Reunion Genomic RNA Homo sapiens
33 JX088705 11811 bp 2010 GD05/2010 China Genomic RNA Homo sapiens
34 HM045817 11832 bp 2005 HD 180760 Senegal Genomic RNA Homo sapiens
35 HM045794 11774 bp 2006 DHS4263-Calif AB USA: California Genomic RNA Homo sapiens
36 FJ000069 11812 bp 2007 IND-KR52 India: Kerala Genomic RNA Homo sapiens
37 EU564334 11772 bp 2006 TM25 Mauritius Genomic RNA Homo sapiens
38 KY704002 11307 bp 2015 CHIKV/Homo sapiens/NIC/1823.1C/2015 Nicaragua: Managua Genomic RNA Homo sapiens; sex: male
39 KJ679578 11567 bp 2011 CHIKV_STMWG02 India Genomic RNA Homo sapiens
40 EU703762 12028 bp 2006 MY021IMR/06/BP Malaysia: Bagan Panchor Genomic RNA Homo sapiens
41 NC_004162
(ref. sequence)
11826 bp unknown S27-African prototype unknown Genomic RNA unknown